WHAT_CHECK validation
| Original PDB entry | Re-refined (only) | Re-refined and rebuilt |
1st generation packing quality1 | -1.427 | -1.427 | -1.408 |
2nd generation packing quality1 | -0.245 | -0.300 | -0.206 |
Ramachandran plot appearance1 | -0.902 | -1.045 | -1.083 |
Chi-1/Chi-2 rotamer normality1 | -0.604 | -0.911 | -0.513 |
Backbone conformation1 | -1.873 | -1.929 | -1.987 |
Bond length RMS Z-score2 | 0.480 | 0.702 | 0.683 |
Bond angle RMS Z-score2 | 1.180 | 0.835 | 0.831 |
Total number of bumps3 | 5 | 9 | 5 |
Unsatisfied H-bond donors/acceptors3 | 5 | 4 | 3 |
| Link | Link | Link |
1 Higher is better, 2 Should be lower than 1.000, 3 Fewer is better