Optimised PDB entry 1dpx



Warnings!

Structure
SpacegroupP 43 21 2
Cell dimensionsa: 77.050 Åb: 77.050 Åc: 37.210 Å
α: 90.00°β: 90.00°γ: 90.00°
Resolution1.65 Å

Experimental data
ReflectionsAll: 13961Test set: 0 (0.0%)
Resolution range38.53 Å1.65 Å

R-values etc.
From PDB headerCalculated from dataAfter re-refinementAfter re-refinement and rebuilding
R0.18700.17940.16910.1720
R-free0.24600.19270.21220.2182
σR-free 0.00620.00690.0071
Z(R-free) 3.50-1.46-1.77

WHAT_CHECK validation
Original PDB entryRe-refined (only)Re-refined and rebuilt
1st generation packing quality1-1.427-1.433-1.418
2nd generation packing quality10.3130.2570.465
Ramachandran plot appearance1-0.251-0.567-0.498
Chi-1/Chi-2 rotamer normality1-0.309-0.4450.127
Backbone conformation1-0.586-0.946-1.098
Bond length RMS Z-score20.4800.6980.682
Bond angle RMS Z-score21.1800.8360.810
Total number of bumps3232015
Unsatisfied H-bond donors/acceptors3944
LinkLinkLink

1 Higher is better, 2 Should be lower than 1.000, 3 Fewer is better


Density map fit (real-space correlation coefficient)
Significantly improved residues0
Significantly deteriorated residues1
Changes of all residuesPlot

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