Optimised PDB entry 1dpx



Warnings!

Structure
SpacegroupP 43 21 2
Cell dimensionsa: 77.050 Åb: 77.050 Åc: 37.210 Å
α: 90.00°β: 90.00°γ: 90.00°
Resolution1.65 Å

Experimental data
ReflectionsAll: 13961Test set: 0 (0.0%)
Resolution range38.53 Å1.65 Å

R-values etc.
From PDB headerCalculated from dataAfter re-refinementAfter re-refinement and rebuilding
R0.18700.17920.16730.1666
R-free0.24600.18270.19840.2036
σR-free 0.00570.00620.0064
Z(R-free) 5.540.27-0.69

WHAT_CHECK validation
Original PDB entryRe-refined (only)Re-refined and rebuilt
1st generation packing quality1-1.427-1.427-1.408
2nd generation packing quality1-0.245-0.300-0.206
Ramachandran plot appearance1-0.902-1.045-1.083
Chi-1/Chi-2 rotamer normality1-0.604-0.911-0.513
Backbone conformation1-1.873-1.929-1.987
Bond length RMS Z-score20.4800.7020.683
Bond angle RMS Z-score21.1800.8350.831
Total number of bumps3595
Unsatisfied H-bond donors/acceptors3543
LinkLinkLink

1 Higher is better, 2 Should be lower than 1.000, 3 Fewer is better


Density map fit (real-space correlation coefficient)
Significantly improved residues7
Significantly deteriorated residues0
Changes of all residuesPlot

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