PDB entry 1dpx


SpacegroupP 43 21 2
Cell dimensionsa: 77.050 Åb: 77.050 Åc: 37.210 Å
α: 90.00°β: 90.00°γ: 90.00°
Resolution1.65 Å

Experimental data
ReflectionsAll: 13961Test set: 0 (0.0%)
Resolution range38.53 Å1.65 Å

R-values etc.
From PDB headerCalculated from dataAfter conservative optimisationAfter full optimisation
σR-free 0.00470.00480.0048
R-free Z-score 1.51-1.98-1.90

WHAT_CHECK validation
Original PDB entryConservatively optimisedFully optimised
1st generation packing quality1-1.427-1.399-1.379
2nd generation packing quality10.3130.2870.445
Ramachandran plot appearance1-0.251-0.565-0.376
Chi-1/Chi-2 rotamer normality1-0.309-0.2370.048
Backbone conformation1-0.586-0.927-1.025
Bond length RMS Z-score20.4800.6090.599
Bond angle RMS Z-score21.1800.7720.751
Total number of bumps3231715
Unsatisfied H-bond donors/acceptors3177
Full WHAT_CHECK reportsLink LinkLink

1 Higher is better
2 Should be lower than 1.000
3 Fewer is better

Electron density map validation
Real-space correlation coefficientReal-space R-factor
Significantly improved residues413
Significantly deteriorated residues00
Changes of all residuesPlot Plot