PDB entry 1fyt


SpacegroupC 1 2 1
Cell dimensionsa: 142.902 Åb: 73.439 Åc: 122.428 Å
α: 90.00°β: 108.23°γ: 90.00°
Resolution2.60 Å

Experimental data
ReflectionsAll: 37159Test set: 1871 (5.0%)
Resolution range24.92 Å2.60 Å

R-values etc.
From PDB headerCalculated from dataAfter conservative optimisationAfter full optimisation
σR-free 0.00410.00380.0037
R-free Z-score 12.176.666.46

WHAT_CHECK validation
Original PDB entryConservatively optimisedFully optimised
1st generation packing quality10.1790.1230.155
2nd generation packing quality1-0.970-0.938-0.753
Ramachandran plot appearance1-1.440-0.453-0.355
Chi-1/Chi-2 rotamer normality1-2.904-2.669-2.300
Backbone conformation10.5530.6150.689
Bond length RMS Z-score20.3790.4510.444
Bond angle RMS Z-score20.7040.6780.658
Total number of bumps31425342
Unsatisfied H-bond donors/acceptors3534844
Full WHAT_CHECK reportsLink LinkLink

1 Higher is better
2 Should be lower than 1.000
3 Fewer is better

Electron density map validation
Real-space correlation coefficientReal-space R-factor
Significantly improved residues12262
Significantly deteriorated residues00
Changes of all residuesPlot Plot