WHAT_CHECK validation
| Original PDB entry | Re-refined (only) | Re-refined and rebuilt |
1st generation packing quality1 | -0.009 | 0.050 | 0.006 |
2nd generation packing quality1 | -0.130 | 0.076 | 0.047 |
Ramachandran plot appearance1 | -1.505 | -0.718 | -0.632 |
Chi-1/Chi-2 rotamer normality1 | -2.742 | -1.700 | -1.547 |
Backbone conformation1 | -0.720 | -0.693 | -0.762 |
Bond length RMS Z-score2 | 0.411 | 0.528 | 0.448 |
Bond angle RMS Z-score2 | 0.701 | 0.757 | 0.697 |
Total number of bumps3 | 117 | 80 | 86 |
Unsatisfied H-bond donors/acceptors3 | 68 | 64 | 66 |
| Link | Link | Link |
1 Higher is better, 2 Should be lower than 1.000, 3 Fewer is better