PDB entry 1gim


SpacegroupP 32 2 1
Cell dimensionsa: 80.820 Åb: 80.820 Åc: 159.030 Å
α: 90.00°β: 90.00°γ: 120.00°
Resolution2.50 Å

Experimental data
ReflectionsAll: 27463Test set: 0 (0.0%)
Resolution range13.77 Å2.20 Å

R-values etc.
From PDB headerCalculated from dataAfter conservative optimisationAfter full optimisation
σR-free 0.0041NA0.0054
R-free Z-score 13.83NA-0.28

WHAT_CHECK validation
Original PDB entryConservatively optimisedFully optimised
1st generation packing quality1-0.661-0.659-0.460
2nd generation packing quality1-1.695-1.696-1.339
Ramachandran plot appearance1-3.390-3.387-2.080
Chi-1/Chi-2 rotamer normality1-3.617-3.618-2.852
Backbone conformation1-0.004-0.0040.092
Bond length RMS Z-score20.5020.5020.583
Bond angle RMS Z-score20.7690.7690.777
Total number of bumps3999948
Unsatisfied H-bond donors/acceptors3383835
Full WHAT_CHECK reportsLink LinkLink

1 Higher is better
2 Should be lower than 1.000
3 Fewer is better

Electron density map validation
Real-space correlation coefficientReal-space R-factor
Significantly improved residues345
Significantly deteriorated residues00
Changes of all residuesPlot Plot