Optimised PDB entry 1gim



Warnings!

Structure
SpacegroupP 32 2 1
Cell dimensionsa: 80.820 Åb: 80.820 Åc: 159.030 Å
α: 90.00°β: 90.00°γ: 120.00°
Resolution2.50 Å

Experimental data
ReflectionsAll: 27463Test set: 0 (0.0%)
Resolution range13.77 Å2.20 Å

R-values etc.
From PDB headerCalculated from dataAfter re-refinementAfter re-refinement and rebuilding
R0.20600.23890.18650.1932
R-free0.27300.23150.24200.2484
σR-free 0.00640.00760.0078
Z(R-free) 13.801.501.81

WHAT_CHECK validation
Original PDB entryRe-refined (only)Re-refined and rebuilt
1st generation packing quality1-0.661-0.530-0.412
2nd generation packing quality1-2.172-1.914-1.546
Ramachandran plot appearance1-4.240-2.648-2.213
Chi-1/Chi-2 rotamer normality1-5.172-4.958-3.560
Backbone conformation1-0.572-0.607-0.486
Bond length RMS Z-score20.5020.7490.575
Bond angle RMS Z-score20.7690.9270.780
Total number of bumps3853830
Unsatisfied H-bond donors/acceptors3362422
LinkLinkLink

1 Higher is better, 2 Should be lower than 1.000, 3 Fewer is better


Density map fit (real-space correlation coefficient)
Significantly improved residues7
Significantly deteriorated residues0
Changes of all residuesPlot

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