Optimised PDB entry 4lp0



Structure
SpacegroupC 2 2 21
Cell dimensionsa: 72.875 Åb: 94.333 Åc: 62.270 Å
α: 90.00°β: 90.00°γ: 90.00°
Resolution1.95 Å

Experimental data
ReflectionsAll: 15830Test set: 788 (5.0%)
Resolution range57.67 Å1.95 Å

R-values etc.
From PDB headerCalculated from dataAfter re-refinementAfter re-refinement and rebuilding
R0.16600.16640.16480.1642
R-free0.20200.20410.19520.1914
σR-free 0.00730.00700.0068
Z(R-free) -0.110.871.35

WHAT_CHECK validation
Original PDB entryRe-refined (only)Re-refined and rebuilt
1st generation packing quality10.4620.4290.442
2nd generation packing quality10.4260.4690.438
Ramachandran plot appearance11.4861.4751.460
Chi-1/Chi-2 rotamer normality1-1.396-0.863-0.931
Backbone conformation10.092-0.234-0.224
Bond length RMS Z-score20.8650.5950.583
Bond angle RMS Z-score20.8470.7950.780
Total number of bumps31054
Unsatisfied H-bond donors/acceptors391012
LinkLinkLink

1 Higher is better, 2 Should be lower than 1.000, 3 Fewer is better


Density map fit (real-space correlation coefficient)
Significantly improved residues1
Significantly deteriorated residues0
Changes of all residuesPlot

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