WHAT_CHECK validation
| Original PDB entry | Re-refined (only) | Re-refined and rebuilt |
1st generation packing quality1 | -1.122 | -1.120 | -1.063 |
2nd generation packing quality1 | -2.820 | -2.819 | -2.594 |
Ramachandran plot appearance1 | -4.484 | -4.486 | -4.048 |
Chi-1/Chi-2 rotamer normality1 | -3.675 | -3.678 | -5.341 |
Backbone conformation1 | -0.628 | -0.614 | -0.688 |
Bond length RMS Z-score2 | 0.285 | 0.286 | 0.529 |
Bond angle RMS Z-score2 | 0.430 | 0.431 | 0.776 |
Total number of bumps3 | 185 | 185 | 140 |
Unsatisfied H-bond donors/acceptors3 | 92 | 93 | 88 |
| Link | Link | Link |
1 Higher is better, 2 Should be lower than 1.000, 3 Fewer is better