PDB entry 3vt8



Structure
SpacegroupC 1 2 1
Cell dimensionsa: 155.068 Åb: 42.052 Åc: 41.868 Å
α: 90.00°β: 95.62°γ: 90.00°
Resolution2.10 Å

Experimental data
ReflectionsAll: 15169Test set: 1520 (10.0%)
Resolution range38.26 Å2.09 Å

R-values etc.
From PDB headerCalculated from dataAfter conservative optimisationAfter full optimisation
R0.18900.18510.16480.1627
R-free0.23500.22770.21020.2121
σR-free 0.00580.00540.0054
R-free Z-score 1.950.48-0.37

WHAT_CHECK validation
Original PDB entryConservatively optimisedFully optimised
1st generation packing quality10.2360.3040.338
2nd generation packing quality1-0.203-0.086-0.132
Ramachandran plot appearance10.1720.8010.751
Chi-1/Chi-2 rotamer normality1-0.706-1.114-0.831
Backbone conformation10.6640.8610.781
Bond length RMS Z-score20.2260.4530.457
Bond angle RMS Z-score20.4740.6950.687
Total number of bumps3161310
Unsatisfied H-bond donors/acceptors3966
Full WHAT_CHECK reportsLink LinkLink

1 Higher is better
2 Should be lower than 1.000
3 Fewer is better

Electron density map validation
Real-space correlation coefficientReal-space R-factor
Significantly improved residues5325
Significantly deteriorated residues01
Changes of all residuesPlot Plot

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