Students supervised
Please contact me if you want to do a student project.
Michiyo Wellington-Oguri 2011 Virus-host prediction
Amanda C. Trindade da Silva 2011 Copper in San Diego Bay
Genivaldo G.Z. Silva 2011 Scaffold builder
Alexey Gritsenko 2010/2011 Scaffolding next-generation sequencing assemblies
Qian Cheng 2010 Origin of mitochondrial targeting signal
Anne van der Ham 2009 Debating genomics and ancestry
Ana A. Freitas 2009 Analysis of Aspergillus fumigatus Solexa sequencing data
Lucas Brouwers 2009 Pathway signatures
Ana A. Freitas 2007/2008 Evolution of functions in the p53 family - Alignment analysis
Ying He 2007 Signature genes search tool
 Bas E. Dutilh, Ying He, Maarten L. Hekkelman and Martijn A. Huynen (2008)
Signature, a web server for taxonomic characterization of sequence samples using signature genes
Nucleic Acids Research 36 (Web Server issue): W470-W474.
Sjoerd Paans 2006/2007 A web application to identify signature genes
Courses and lectures
UFRJ Rio de Janeiro, Brazil, October 2011 6th workshop on comparative microbial genomics and taxonomy CMGT2011 (lectures & practical)
SDSU San Diego CA, USA, April 2011 Microbial Genetics and Physiology (lecture)
SENSE Wageningen, NL, February 2011 Principles of Ecological Genomics (lecture)
NCMLS Nijmegen, NL, November 2010 Masters' course Molecular Mechanisms of Disease (Cell Growth and Differentiation 3: Core Fundamental) (organizer, lectures and practical)
NCMLS Nijmegen, NL, October/November 2009 Masters' course Molecular Mechanisms of Disease (Cell Growth and Differentiation 3) (organizer, lectures and practical)
NCMLS Nijmegen, NL, November 2008 Masters' course Molecular Mechanisms of Disease (Cell Growth and Differentiation 3) (organizer, lectures and practical)
NCMLS Nijmegen, NL, October 2008 Masters' course Molecular Mechanisms of Disease (2) (lecture)
EMBO Florianopolis, Brazil, July 2008 Advanced Course on Bioinformatics and Comparative Genome Analysis (lectures)
NCMLS Nijmegen, NL, September - December 2007 Bioinformatics Seminars: Data, techniques and applications (lectures & practical)
ELSYS Enschede, NL, February 2007 European Life Science for Young Scientists Conference (lecture)