| Subsystem | Regulon | Motif | internal correlations |
| Unkown I | Regulon_577_2 | |
0.8313 |
| Unknown II | Regulon_145_1 | |
0.804025 |
| CtsR | Regulon_63_1 | | 0.980075 |
| Unknown III | Regulon_59_4 | |
0.811675 |
| Unknown III | Regulon_55_1 | |
0.80382 |
| SOS response | Regulon_909_4 | |
0.840975 |
| SOS response | Regulon_171_3 | |
0.827875 |
| SOS response | Regulon_1473_1 | |
0.820533333333 |
| SOS response | Regulon_1472_2 | |
0.790755555556 |
| Sugar and Energy Metabolism I | Regulon_1398_3 | | 0.910425 |
| Sugar and Energy Metabolism I | Regulon_1674_4 | | 0.8724 |
| Sugar and Energy Metabolism I | Regulon_431_1 | |
0.85555 |
| Sugar and Energy Metabolism I | Regulon_485_4 | |
0.492730769231 |
| Sugar and Energy Metabolism I | Regulon_1351_1 | |
0.3753 |
| Sugar and Energy Metabolism I | Regulon_1665_3 | |
0.32244 |
| Sugar and Energy Metabolism I | Regulon_431_2 | |
0.274864285714 |
| Sugar and Energy Metabolism I | Regulon_434_1 | |
0.147814285714 |
| Sugar and Energy Metabolism II | Regulon_1647_2 | |
0.855725 |
| Sugar and Energy Metabolism II | Regulon_1276_4 | | 0.843575 |
| Sugar and Energy Metabolism II | Regulon_144_3 | | 0.789414285714 |
| Sugar and Energy Metabolism II | Regulon_1644_4 | |
0.6786 |
| Nitrogen | Regulon_101_4 | |
0.809975 |
| Nitrogen | Regulon_1655_3 | | 0.782954545455 |
| Nitrogen | Regulon_1715_1 | | 0.757266666667 |
| Nitrogen | Regulon_267_1 | | 0.7080375 |
| Nitrogen | Regulon_1531_1 | | 0.461357142857 |
| Nitrogen | Regulon_747_1 | | 0.444842857143 |
| Nitrogen | Regulon_1407_2 | | 0.373690909091 |
| Nitrogen | Regulon_139_3 | | 0.297042857143 |
| Nitrogen | Regulon_676_2 | | 0.264091666667 |
| Nitrogen | Regulon_204_3 | | 0.227835714286 |